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NIX Worker 29a112f380 Adding calculateCenters.py and doAnalysis.py as drivers to replace equivalent shell scripts, so python can start matlab il y a 1 an
..
README.md bbe9982a4c Adding test.py slicer script il y a 1 an
analysis.py e3c0099dab Making analysis run matlab scripts directly il y a 1 an
analyze.ipynb 9941f28c57 Adding convertToNRRD.py script il y a 2 ans
calculateCenters.py 29a112f380 Adding calculateCenters.py and doAnalysis.py as drivers to replace equivalent shell scripts, so python can start matlab il y a 1 an
calculateK1.ipynb 1440d682a0 Adding scripts il y a 3 ans
clusterAnalysis.ipynb 034e09bc30 Modified notebooks il y a 2 ans
clusterAnalysisLeftovers.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. il y a 2 ans
config.py 8d56a9f074 Rearranging scripts to do IO and parse config il y a 1 an
doAnalysis.py 29a112f380 Adding calculateCenters.py and doAnalysis.py as drivers to replace equivalent shell scripts, so python can start matlab il y a 1 an
downloadPatient.py 1440d682a0 Adding scripts il y a 3 ans
generateCenters.ipynb fde4aa8d47 Up to generate centers, including matlab files il y a 2 ans
getData.py 8d56a9f074 Rearranging scripts to do IO and parse config il y a 1 an
parseDicom.py 9941f28c57 Adding convertToNRRD.py script il y a 2 ans
pixelAnalysis.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. il y a 2 ans
plotK1.ipynb 9941f28c57 Adding convertToNRRD.py script il y a 2 ans
plotPolar.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. il y a 2 ans
plotViews.ipynb 1440d682a0 Adding scripts il y a 3 ans
segmentation.ipynb 034e09bc30 Modified notebooks il y a 2 ans
segmentation.py 8f169c6170 Moving segmentation functions from notebook to package il y a 2 ans
selectCenters.ipynb 1440d682a0 Adding scripts il y a 3 ans
statAnalysis.ipynb 1440d682a0 Adding scripts il y a 3 ans
table.ipynb 1440d682a0 Adding scripts il y a 3 ans
vtkInterface.py 9941f28c57 Adding convertToNRRD.py script il y a 2 ans

README.md

Instructions

Look at `clusterAnalysis.ipynb' for a step by step algorithm.

The only required files for analysis are:

  • ../slicerScripts/convertToNRRD.py
  • analysis.py
  • segmentation.py
  • getData.py
  • config.py
  • segmentation.ipynb
  • clusterAnalysis.ipynb

The rest are for backup only.