studen/dynamicSPECT @ 881d83b4c786d3c560c2e0c6192595b5e47011dc

NIX Worker 8d56a9f074 Rearranging scripts to do IO and parse config		vor 1 Jahr
..
README.md	bbe9982a4c Adding test.py slicer script	vor 1 Jahr
analysis.py	e3c0099dab Making analysis run matlab scripts directly	vor 1 Jahr
analyze.ipynb	9941f28c57 Adding convertToNRRD.py script	vor 2 Jahren
calculateK1.ipynb	1440d682a0 Adding scripts	vor 3 Jahren
clusterAnalysis.ipynb	034e09bc30 Modified notebooks	vor 2 Jahren
clusterAnalysisLeftovers.ipynb	c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022.	vor 2 Jahren
config.py	8d56a9f074 Rearranging scripts to do IO and parse config	vor 1 Jahr
downloadPatient.py	1440d682a0 Adding scripts	vor 3 Jahren
generateCenters.ipynb	fde4aa8d47 Up to generate centers, including matlab files	vor 2 Jahren
getData.py	8d56a9f074 Rearranging scripts to do IO and parse config	vor 1 Jahr
parseDicom.py	9941f28c57 Adding convertToNRRD.py script	vor 2 Jahren
pixelAnalysis.ipynb	c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022.	vor 2 Jahren
plotK1.ipynb	9941f28c57 Adding convertToNRRD.py script	vor 2 Jahren
plotPolar.ipynb	c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022.	vor 2 Jahren
plotViews.ipynb	1440d682a0 Adding scripts	vor 3 Jahren
segmentation.ipynb	034e09bc30 Modified notebooks	vor 2 Jahren
segmentation.py	8f169c6170 Moving segmentation functions from notebook to package	vor 2 Jahren
selectCenters.ipynb	1440d682a0 Adding scripts	vor 3 Jahren
statAnalysis.ipynb	1440d682a0 Adding scripts	vor 3 Jahren
table.ipynb	1440d682a0 Adding scripts	vor 3 Jahren
vtkInterface.py	9941f28c57 Adding convertToNRRD.py script	vor 2 Jahren

Instructions

Look at `clusterAnalysis.ipynb' for a step by step algorithm.

The only required files for analysis are:

../slicerScripts/convertToNRRD.py
analysis.py
segmentation.py
getData.py
config.py
segmentation.ipynb
clusterAnalysis.ipynb

The rest are for backup only.

README.md

Instructions