Sākums Izpētīt Palīdzība
Pierakstīties
studen
/
dynamicSPECT
1
0
Atdalīts 0
Faili Problēmas 0 Izmaiņu pieprasījumi 0 Vikivietne
Koks: 8d56a9f074
Atzari Tagi
dynamicSPECT
/
pythonScripts
NIX Worker 8d56a9f074 Rearranging scripts to do IO and parse config 2 gadi atpakaļ
..
README.md bbe9982a4c Adding test.py slicer script 2 gadi atpakaļ
analysis.py e3c0099dab Making analysis run matlab scripts directly 2 gadi atpakaļ
analyze.ipynb 9941f28c57 Adding convertToNRRD.py script 3 gadi atpakaļ
calculateK1.ipynb 1440d682a0 Adding scripts 4 gadi atpakaļ
clusterAnalysis.ipynb 034e09bc30 Modified notebooks 3 gadi atpakaļ
clusterAnalysisLeftovers.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. 3 gadi atpakaļ
config.py 8d56a9f074 Rearranging scripts to do IO and parse config 2 gadi atpakaļ
downloadPatient.py 1440d682a0 Adding scripts 4 gadi atpakaļ
generateCenters.ipynb fde4aa8d47 Up to generate centers, including matlab files 3 gadi atpakaļ
getData.py 8d56a9f074 Rearranging scripts to do IO and parse config 2 gadi atpakaļ
parseDicom.py 9941f28c57 Adding convertToNRRD.py script 3 gadi atpakaļ
pixelAnalysis.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. 3 gadi atpakaļ
plotK1.ipynb 9941f28c57 Adding convertToNRRD.py script 3 gadi atpakaļ
plotPolar.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. 3 gadi atpakaļ
plotViews.ipynb 1440d682a0 Adding scripts 4 gadi atpakaļ
segmentation.ipynb 034e09bc30 Modified notebooks 3 gadi atpakaļ
segmentation.py 8f169c6170 Moving segmentation functions from notebook to package 3 gadi atpakaļ
selectCenters.ipynb 1440d682a0 Adding scripts 4 gadi atpakaļ
statAnalysis.ipynb 1440d682a0 Adding scripts 4 gadi atpakaļ
table.ipynb 1440d682a0 Adding scripts 4 gadi atpakaļ
vtkInterface.py 9941f28c57 Adding convertToNRRD.py script 3 gadi atpakaļ

README.md

Instructions

Look at `clusterAnalysis.ipynb' for a step by step algorithm.

The only required files for analysis are:

  • ../slicerScripts/convertToNRRD.py
  • analysis.py
  • segmentation.py
  • getData.py
  • config.py
  • segmentation.ipynb
  • clusterAnalysis.ipynb

The rest are for backup only.