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pythonScripts
Andrej 94c1f26a25 Addint getPatientNIM to getData vor 1 Jahr
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README.md bbe9982a4c Adding test.py slicer script vor 1 Jahr
analysis.py e3c0099dab Making analysis run matlab scripts directly vor 1 Jahr
analyze.ipynb 345e0bdcec Minor updates to scripts, config file is also used in vangogh mode vor 1 Jahr
calculateCenters.py 29a112f380 Adding calculateCenters.py and doAnalysis.py as drivers to replace equivalent shell scripts, so python can start matlab vor 1 Jahr
calculateK1.ipynb 1440d682a0 Adding scripts vor 3 Jahren
clusterAnalysis.ipynb 345e0bdcec Minor updates to scripts, config file is also used in vangogh mode vor 1 Jahr
clusterAnalysisLeftovers.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. vor 2 Jahren
config.py 8d56a9f074 Rearranging scripts to do IO and parse config vor 1 Jahr
doAnalysis.py 29a112f380 Adding calculateCenters.py and doAnalysis.py as drivers to replace equivalent shell scripts, so python can start matlab vor 1 Jahr
downloadPatient.py 1440d682a0 Adding scripts vor 3 Jahren
generateCenters.ipynb fde4aa8d47 Up to generate centers, including matlab files vor 2 Jahren
getData.py 94c1f26a25 Addint getPatientNIM to getData vor 1 Jahr
parseDicom.py 9941f28c57 Adding convertToNRRD.py script vor 2 Jahren
pixelAnalysis.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. vor 2 Jahren
plotK1.ipynb 9941f28c57 Adding convertToNRRD.py script vor 2 Jahren
plotPolar.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. vor 2 Jahren
plotViews.ipynb 1440d682a0 Adding scripts vor 3 Jahren
segmentation.ipynb 345e0bdcec Minor updates to scripts, config file is also used in vangogh mode vor 1 Jahr
segmentation.py 345e0bdcec Minor updates to scripts, config file is also used in vangogh mode vor 1 Jahr
selectCenters.ipynb 1440d682a0 Adding scripts vor 3 Jahren
statAnalysis.ipynb 1440d682a0 Adding scripts vor 3 Jahren
table.ipynb 1440d682a0 Adding scripts vor 3 Jahren
vtkInterface.py 9941f28c57 Adding convertToNRRD.py script vor 2 Jahren

README.md

Instructions

Look at `clusterAnalysis.ipynb' for a step by step algorithm.

The only required files for analysis are:

  • ../slicerScripts/convertToNRRD.py
  • analysis.py
  • segmentation.py
  • getData.py
  • config.py
  • segmentation.ipynb
  • clusterAnalysis.ipynb

The rest are for backup only.