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dynamicSPECT
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pythonScripts
NIX Worker e396c17716 Preparing to run with pixelAnalysis 1 year ago
..
README.md bbe9982a4c Adding test.py slicer script 1 year ago
analysis.py e396c17716 Preparing to run with pixelAnalysis 1 year ago
analyze.ipynb 345e0bdcec Minor updates to scripts, config file is also used in vangogh mode 1 year ago
calculateCenters.py 29a112f380 Adding calculateCenters.py and doAnalysis.py as drivers to replace equivalent shell scripts, so python can start matlab 1 year ago
calculateK1.ipynb 1440d682a0 Adding scripts 3 years ago
clusterAnalysis.ipynb 345e0bdcec Minor updates to scripts, config file is also used in vangogh mode 1 year ago
clusterAnalysisLeftovers.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. 2 years ago
config.py e396c17716 Preparing to run with pixelAnalysis 1 year ago
doAnalysis.py 29a112f380 Adding calculateCenters.py and doAnalysis.py as drivers to replace equivalent shell scripts, so python can start matlab 1 year ago
downloadPatient.py 1440d682a0 Adding scripts 3 years ago
generateCenters.ipynb fde4aa8d47 Up to generate centers, including matlab files 2 years ago
getData.py e396c17716 Preparing to run with pixelAnalysis 1 year ago
parseDicom.py 9941f28c57 Adding convertToNRRD.py script 2 years ago
pixelAnalysis.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. 2 years ago
plotK1.ipynb 9941f28c57 Adding convertToNRRD.py script 2 years ago
plotPolar.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. 2 years ago
plotViews.ipynb 1440d682a0 Adding scripts 3 years ago
segmentation.ipynb dcc9d0f7be Updates to jupyter 1 year ago
segmentation.py e396c17716 Preparing to run with pixelAnalysis 1 year ago
selectCenters.ipynb 1440d682a0 Adding scripts 3 years ago
statAnalysis.ipynb 1440d682a0 Adding scripts 3 years ago
table.ipynb 1440d682a0 Adding scripts 3 years ago
vtkInterface.py 9941f28c57 Adding convertToNRRD.py script 2 years ago

README.md

Instructions

Look at `clusterAnalysis.ipynb' for a step by step algorithm.

The only required files for analysis are:

  • ../slicerScripts/convertToNRRD.py
  • analysis.py
  • segmentation.py
  • getData.py
  • config.py
  • segmentation.ipynb
  • clusterAnalysis.ipynb

The rest are for backup only.