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dynamicSPECT
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pythonScripts
NIX Worker e3c0099dab Making analysis run matlab scripts directly hai 1 ano
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README.md bbe9982a4c Adding test.py slicer script hai 1 ano
analysis.py e3c0099dab Making analysis run matlab scripts directly hai 1 ano
analyze.ipynb 9941f28c57 Adding convertToNRRD.py script %!s(int64=2) %!d(string=hai) anos
calculateK1.ipynb 1440d682a0 Adding scripts %!s(int64=3) %!d(string=hai) anos
clusterAnalysis.ipynb 034e09bc30 Modified notebooks %!s(int64=2) %!d(string=hai) anos
clusterAnalysisLeftovers.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. %!s(int64=2) %!d(string=hai) anos
config.py c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. %!s(int64=2) %!d(string=hai) anos
downloadPatient.py 1440d682a0 Adding scripts %!s(int64=3) %!d(string=hai) anos
generateCenters.ipynb fde4aa8d47 Up to generate centers, including matlab files %!s(int64=2) %!d(string=hai) anos
getData.py c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. %!s(int64=2) %!d(string=hai) anos
parseDicom.py 9941f28c57 Adding convertToNRRD.py script %!s(int64=2) %!d(string=hai) anos
pixelAnalysis.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. %!s(int64=2) %!d(string=hai) anos
plotK1.ipynb 9941f28c57 Adding convertToNRRD.py script %!s(int64=2) %!d(string=hai) anos
plotPolar.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. %!s(int64=2) %!d(string=hai) anos
plotViews.ipynb 1440d682a0 Adding scripts %!s(int64=3) %!d(string=hai) anos
segmentation.ipynb 034e09bc30 Modified notebooks %!s(int64=2) %!d(string=hai) anos
segmentation.py 8f169c6170 Moving segmentation functions from notebook to package %!s(int64=2) %!d(string=hai) anos
selectCenters.ipynb 1440d682a0 Adding scripts %!s(int64=3) %!d(string=hai) anos
statAnalysis.ipynb 1440d682a0 Adding scripts %!s(int64=3) %!d(string=hai) anos
table.ipynb 1440d682a0 Adding scripts %!s(int64=3) %!d(string=hai) anos
vtkInterface.py 9941f28c57 Adding convertToNRRD.py script %!s(int64=2) %!d(string=hai) anos

README.md

Instructions

Look at `clusterAnalysis.ipynb' for a step by step algorithm.

The only required files for analysis are:

  • ../slicerScripts/convertToNRRD.py
  • analysis.py
  • segmentation.py
  • getData.py
  • config.py
  • segmentation.ipynb
  • clusterAnalysis.ipynb

The rest are for backup only.