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LambdaOptimization.png
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5cb119b5ff
Optimization hyperparameter lambda setting illustration for regularizing on IVF parameter A
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hai 1 ano |
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README.md
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bbe9982a4c
Adding test.py slicer script
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hai 1 ano |
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analysis.py
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8d8c79e32b
Updating analysis.py to work with modified version of segmentation.py
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hai 1 ano |
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analyze.ipynb
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345e0bdcec
Minor updates to scripts, config file is also used in vangogh mode
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hai 1 ano |
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assignOrthancStudy.ipynb
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ad99d7cd50
Recent updates
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hai 1 ano |
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calculateCenters.py
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e556aa5b32
Adding update status function to report progress
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hai 1 ano |
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calculateK1.ipynb
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1440d682a0
Adding scripts
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%!s(int64=3) %!d(string=hai) anos |
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clusterAnalysis.ipynb
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87d8bfd583
validating summaryIVF
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hai 1 ano |
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clusterAnalysisLeftovers.ipynb
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c317e06d8d
Version that produced results sent in email to Luka, Oct 28th 2022.
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%!s(int64=2) %!d(string=hai) anos |
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config.py
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012848dc66
Adding regularization to compartment fits
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hai 1 ano |
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doAnalysis.py
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a4028e9849
Minor corrections to doAnalysis
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hai 1 ano |
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doPixelAnalysis.py
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985248eb9f
Changing loops in doPixelAnalysis
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hai 1 ano |
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doSummary.py
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6f536a609c
operable doSummary.py
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hai 1 ano |
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downloadPatient.py
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1440d682a0
Adding scripts
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%!s(int64=3) %!d(string=hai) anos |
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fitData.py
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012848dc66
Adding regularization to compartment fits
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hai 1 ano |
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fitModel.py
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012848dc66
Adding regularization to compartment fits
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hai 1 ano |
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generateCenters.ipynb
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fde4aa8d47
Up to generate centers, including matlab files
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%!s(int64=2) %!d(string=hai) anos |
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geometry.py
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504c2ae9db
Adding port from matlab fitting to python fitting, new python code based on global optimization with lambda adjusted regularizer
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hai 1 ano |
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getData.py
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5bffcfe431
Cleared error from getData updateStatus, making sure that status is also checked for entries with converted images
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hai 1 ano |
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loadData.py
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012848dc66
Adding regularization to compartment fits
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hai 1 ano |
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parseDicom.py
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9941f28c57
Adding convertToNRRD.py script
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%!s(int64=2) %!d(string=hai) anos |
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pixelAnalysis.ipynb
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c317e06d8d
Version that produced results sent in email to Luka, Oct 28th 2022.
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%!s(int64=2) %!d(string=hai) anos |
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plotData.py
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a0af1ed42c
Moving plotSegmentation from segmentation.py to plotData to avoid matplotlib dependency in Slicer, through convertToNRRD.py which depends on segmentation.py
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hai 1 ano |
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plotK1.ipynb
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9941f28c57
Adding convertToNRRD.py script
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%!s(int64=2) %!d(string=hai) anos |
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plotPolar.ipynb
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c317e06d8d
Version that produced results sent in email to Luka, Oct 28th 2022.
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%!s(int64=2) %!d(string=hai) anos |
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plotViews.ipynb
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1440d682a0
Adding scripts
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%!s(int64=3) %!d(string=hai) anos |
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segmentation.ipynb
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15edb29494
Update to jupyter
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hai 1 ano |
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segmentation.py
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a0af1ed42c
Moving plotSegmentation from segmentation.py to plotData to avoid matplotlib dependency in Slicer, through convertToNRRD.py which depends on segmentation.py
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hai 1 ano |
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selectCenters.ipynb
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1440d682a0
Adding scripts
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%!s(int64=3) %!d(string=hai) anos |
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statAnalysis.ipynb
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1440d682a0
Adding scripts
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%!s(int64=3) %!d(string=hai) anos |
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table.ipynb
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1440d682a0
Adding scripts
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%!s(int64=3) %!d(string=hai) anos |
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test.ipynb
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8b606a3b56
Cleaning up listCreatedFiles in workflow
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hai 1 ano |
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vtkInterface.py
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9941f28c57
Adding convertToNRRD.py script
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%!s(int64=2) %!d(string=hai) anos |
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workflow.py
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7f7c5fe190
Clearing merge conflicts
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hai 1 ano |
Andrej Studen@Labkey-KNM
7f7c5fe190
Clearing merge conflicts
