Commit History

Author SHA1 Message Date
  Andrej Studen @ VBOX 7dad40c53c Removing minor errors in NPZ routines 8 months ago
  Andrej Studen @ VBOX 984655eb1a Adding python routines for NPZ coding and decoding 8 months ago
  Andrej Studen @ VBOX 7d32a10f56 AIQ verified version of NPZ generation 8 months ago
  Andrej Studen @ VBOX dcf17fa4b8 Adding script to generate anonymized numpy files out of DICOMS from orthanc 8 months ago
  Andrej Studen 6ddf9fcc67 Adding entry filter to allow for selection in processing, also, debug parameter in template stops processing after the first entry 1 year ago
  Andrej Studen ed88df579b Adding debug to template to set processing to debug mode (eg. to stop processing after the first entry 1 year ago
  Andrej Studen b778cea967 Adding entryFilter to template, set to empty to select all entries. entryFilter can be overloaded via parameterOverload element of analysisModule lists 1 year ago
  Andrej Studen 688b491289 Adding site specific __[setup:paths]softwareSrc__ replace pattern to allow for site specific path to software 1 year ago
  Andrej Studen 0ea84c60d5 Changing README to md format, allowing pre-configured path for model in testConfig 1 year ago
  Andrej Studen cba44a449a Debugged version of DM for series production 1 year ago
  Andrej Studen 05b5533727 updated segmentation query entry form to match nnUNET 1 year ago
  Andrej Studen c87c6e3cc1 Realinging runSegmentationDM to use nixWrapper to load dependencies 1 year ago
  Andrej Studen f50a92ad9c Expanding analysis to additional segmentations in organ_percentile 1 year ago
  Andrej Studen 5c691d080a Adding copyAnonymizedDataset.py 1 year ago
  NIX User f045cc682d Correcting a dangling if clause in populateImagingFromTransferList.py 2 years ago
  NIX User de0c3210bc Merge branch 'master' of https://git0.fmf.uni-lj.si/studen/iraemm 2 years ago
  NIX User de0e000713 Correcting populateImagingFromTransferList to post studyDate to labkey 2 years ago
  Andrej Studen bbed7b3e28 Merge branch 'master' of https://git0.fmf.uni-lj.si/studen/irAEMM 2 years ago
  Andrej Studen 04a1454e76 Robustifying for missing images, mismatches, etc. 2 years ago
  NIX User d4e0acb3ef Allow populateImaging to detect not only missing images, but multiple matches as well. Signaled by empty CT/PET_orthancId and lines in missingImages 2 years ago
  Andrej 572caa77de Merge to head 3 years ago
  Andrej 1520c0e04d Adding configuration files 3 years ago
  Andrej Studen e50b84a2f2 Merge branch 'master' of https://git0.fmf.uni-lj.si/studen/iraemm 3 years ago
  Andrej Studen 95e8ceafb2 Adding templates 3 years ago
  Andrej Studen/Merlin fd919a26ca Merge branch 'master' of ssh://git0.fmf.uni-lj.si:2222/studen/iraemm 3 years ago
  Andrej Studen/Merlin bf94d54099 Merged to head, currently, concrete path is specified in segmentation/test/testConfig.cfg.template, should be replace by generic paths 3 years ago
  Andrej Studen/Merlin 07a1e15517 Adding missed configuration files 3 years ago
  Andrej Studen/Merlin bf82421965 Adding redirect to testConfig.cfg.template 3 years ago
  Andrej Studen 957b0c2fff Updates to automatic routines 3 years ago
  NIX User 45062e572d Adding verbosity in populateImagingFromTransferList 3 years ago