 Andrej Studen @ VBOX
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7dad40c53c
Removing minor errors in NPZ routines
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11 months ago |
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Andrej Studen @ VBOX
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984655eb1a
Adding python routines for NPZ coding and decoding
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11 months ago |
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Andrej Studen @ VBOX
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7d32a10f56
AIQ verified version of NPZ generation
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11 months ago |
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Andrej Studen @ VBOX
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dcf17fa4b8
Adding script to generate anonymized numpy files out of DICOMS from orthanc
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11 months ago |
 Andrej Studen
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6ddf9fcc67
Adding entry filter to allow for selection in processing, also, debug parameter in template stops processing after the first entry
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1 year ago |
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Andrej Studen
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ed88df579b
Adding debug to template to set processing to debug mode (eg. to stop processing after the first entry
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1 year ago |
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Andrej Studen
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b778cea967
Adding entryFilter to template, set to empty to select all entries. entryFilter can be overloaded via parameterOverload element of analysisModule lists
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1 year ago |
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Andrej Studen
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688b491289
Adding site specific __[setup:paths]softwareSrc__ replace pattern to allow for site specific path to software
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1 year ago |
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Andrej Studen
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0ea84c60d5
Changing README to md format, allowing pre-configured path for model in testConfig
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1 year ago |
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Andrej Studen
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cba44a449a
Debugged version of DM for series production
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1 year ago |
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Andrej Studen
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05b5533727
updated segmentation query entry form to match nnUNET
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1 year ago |
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Andrej Studen
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c87c6e3cc1
Realinging runSegmentationDM to use nixWrapper to load dependencies
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1 year ago |
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Andrej Studen
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f50a92ad9c
Expanding analysis to additional segmentations in organ_percentile
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1 year ago |
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Andrej Studen
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5c691d080a
Adding copyAnonymizedDataset.py
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2 years ago |
 NIX User
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f045cc682d
Correcting a dangling if clause in populateImagingFromTransferList.py
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2 years ago |
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NIX User
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de0c3210bc
Merge branch 'master' of https://git0.fmf.uni-lj.si/studen/iraemm
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2 years ago |
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NIX User
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de0e000713
Correcting populateImagingFromTransferList to post studyDate to labkey
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2 years ago |
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Andrej Studen
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bbed7b3e28
Merge branch 'master' of https://git0.fmf.uni-lj.si/studen/irAEMM
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3 years ago |
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Andrej Studen
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04a1454e76
Robustifying for missing images, mismatches, etc.
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3 years ago |
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NIX User
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d4e0acb3ef
Allow populateImaging to detect not only missing images, but multiple matches as well. Signaled by empty CT/PET_orthancId and lines in missingImages
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3 years ago |
 Andrej
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572caa77de
Merge to head
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3 years ago |
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Andrej
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1520c0e04d
Adding configuration files
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3 years ago |
 Andrej Studen
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e50b84a2f2
Merge branch 'master' of https://git0.fmf.uni-lj.si/studen/iraemm
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3 years ago |
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Andrej Studen
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95e8ceafb2
Adding templates
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3 years ago |
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Andrej Studen/Merlin
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fd919a26ca
Merge branch 'master' of ssh://git0.fmf.uni-lj.si:2222/studen/iraemm
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3 years ago |
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Andrej Studen/Merlin
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bf94d54099
Merged to head, currently, concrete path is specified in segmentation/test/testConfig.cfg.template, should be replace by generic paths
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3 years ago |
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Andrej Studen/Merlin
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07a1e15517
Adding missed configuration files
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3 years ago |
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Andrej Studen/Merlin
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bf82421965
Adding redirect to testConfig.cfg.template
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3 years ago |
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Andrej Studen
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957b0c2fff
Updates to automatic routines
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3 years ago |
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NIX User
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45062e572d
Adding verbosity in populateImagingFromTransferList
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3 years ago |
