studen/irAEMM @ 1cb816f9f97b6d73a8541102e57f9a362621e7c6

NIX User 1cb816f9f9 Merge to core		3 gadi atpakaļ
..
README	53fb46eaa9 Updating to recent version	4 gadi atpakaļ
addSegmentations.py	3dec2cb5da Update add segmentations	4 gadi atpakaļ
anonymizeImages.py	ae65c9190e Updates	4 gadi atpakaļ
anonymizeImagesNIfTI.py	53fb46eaa9 Updating to recent version	4 gadi atpakaļ
anonymizeSegmentations.py	05fa966798 Recent updates	3 gadi atpakaļ
copyAnonymizedDataset.py	1f7661b703 Adding database management routines	4 gadi atpakaļ
copyAnonymizedImagesToOrthanc.py	1f7661b703 Adding database management routines	4 gadi atpakaļ
copyToOrthanc.py	1fd9314ca6 Initial import	4 gadi atpakaļ
fillClinicalDataInternational.ipynb	90b4734ea6 Adding iypnb jupyter scripts for database manipulation	3 gadi atpakaļ
findCandidatesForSchedule.py	d027e88d51 Adding findCandidatesForSchedule.py	3 gadi atpakaļ
getImages.py	1fd9314ca6 Initial import	4 gadi atpakaļ
iraemmUploadTestPatients.ipynb	90b4734ea6 Adding iypnb jupyter scripts for database manipulation	3 gadi atpakaļ
makeAnonymizeLinks.py	1fd9314ca6 Initial import	4 gadi atpakaļ
makeAnonymizedDataset.py	1f7661b703 Adding database management routines	4 gadi atpakaļ
modifyPatients.py	1f7661b703 Adding database management routines	4 gadi atpakaļ
populateImagingFromOrthanc.py	07478c6846 Making populateImagingFromOrthance.py use Analysis/Run infrastructure	4 gadi atpakaļ
populateImagingFromTransferList.py	7df6a921f2 Updating populateImageFromTransferList to update failureStatus	3 gadi atpakaļ
preprocess.py	083ed06079 Changing to nixWrapper	3 gadi atpakaļ
runPython.sh	1cb816f9f9 Merge to core	3 gadi atpakaļ
runPythonnnUNet.sh	f1c4e7b732 Adding un-buffer flag to python for uptodate output	3 gadi atpakaļ
runSegmentationDM.py	9ae439d111 Adding segmentation configuration files	3 gadi atpakaļ
runSegmentationnnUNet.py	9ae439d111 Adding segmentation configuration files	3 gadi atpakaļ
test.py	43c785d716 Adding test.py script	3 gadi atpakaļ

		
				README
			
				Run with ./runPython.sh script.py