studen/irAEMM @ 1cb816f9f97b6d73a8541102e57f9a362621e7c6

NIX User 1cb816f9f9 Merge to core		3 år sedan
..
README	53fb46eaa9 Updating to recent version	4 år sedan
addSegmentations.py	3dec2cb5da Update add segmentations	4 år sedan
anonymizeImages.py	ae65c9190e Updates	4 år sedan
anonymizeImagesNIfTI.py	53fb46eaa9 Updating to recent version	4 år sedan
anonymizeSegmentations.py	05fa966798 Recent updates	3 år sedan
copyAnonymizedDataset.py	1f7661b703 Adding database management routines	4 år sedan
copyAnonymizedImagesToOrthanc.py	1f7661b703 Adding database management routines	4 år sedan
copyToOrthanc.py	1fd9314ca6 Initial import	4 år sedan
fillClinicalDataInternational.ipynb	90b4734ea6 Adding iypnb jupyter scripts for database manipulation	3 år sedan
findCandidatesForSchedule.py	d027e88d51 Adding findCandidatesForSchedule.py	3 år sedan
getImages.py	1fd9314ca6 Initial import	4 år sedan
iraemmUploadTestPatients.ipynb	90b4734ea6 Adding iypnb jupyter scripts for database manipulation	3 år sedan
makeAnonymizeLinks.py	1fd9314ca6 Initial import	4 år sedan
makeAnonymizedDataset.py	1f7661b703 Adding database management routines	4 år sedan
modifyPatients.py	1f7661b703 Adding database management routines	4 år sedan
populateImagingFromOrthanc.py	07478c6846 Making populateImagingFromOrthance.py use Analysis/Run infrastructure	4 år sedan
populateImagingFromTransferList.py	7df6a921f2 Updating populateImageFromTransferList to update failureStatus	3 år sedan
preprocess.py	083ed06079 Changing to nixWrapper	3 år sedan
runPython.sh	1cb816f9f9 Merge to core	3 år sedan
runPythonnnUNet.sh	f1c4e7b732 Adding un-buffer flag to python for uptodate output	3 år sedan
runSegmentationDM.py	9ae439d111 Adding segmentation configuration files	3 år sedan
runSegmentationnnUNet.py	9ae439d111 Adding segmentation configuration files	3 år sedan
test.py	43c785d716 Adding test.py script	3 år sedan

		
				README
			
				Run with ./runPython.sh script.py