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Andrej Studen 5a929f9cc8 Add README.md 4 years ago
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README.md 5a929f9cc8 Add README.md 4 years ago

README.md

Immunotherapy related adverse effects toolbox

Manage images and data related to irAE project.

Dependencies

To access LabKey, the python API was used. Anonymization and NIfTI conversion are based on phenomenal nibabel tools. Data storage is provided by [Orthanc][] with associated [interface][orthancInterface].

#Usage

Anonymization must be run as a tomcat8 user for access to data files. Check setup in the anonymization.py and run it with runPython.sh anonymization.py.

[orthancInterface] http://iscigt.powertheword.com/andrej.studen/orthancInterface