Andrej Studen
5a929f9cc8
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README.md
Immunotherapy related adverse effects toolbox
Manage images and data related to irAE project.
Dependencies
To access LabKey, the python API was used. Anonymization and NIfTI conversion are based on phenomenal nibabel tools. Data storage is provided by [Orthanc][] with associated [interface][orthancInterface].
#Usage
Anonymization must be run as a tomcat8 user for access to data files. Check setup
in the anonymization.py and run it with runPython.sh anonymization.py.
[orthancInterface] http://iscigt.powertheword.com/andrej.studen/orthancInterface