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irAEMM
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Andrej Studen a4d1955133 Update README.md hace 4 años
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pythonScripts ab41342943 Script to put segmentations at the correct places hace 4 años
slicerModule 67ef22559c Adding irAEMMBrowser hace 4 años
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setup.json.template b986ecdaba Adding path template for site configuration hace 4 años

README.md

Immunotherapy related adverse effects toolbox

Manage images and data related to irAE project.

Slicer module

Installation

Download the code and [dependencies][]

Dependencies

To access LabKey, the python API was used. Anonymization and NIfTI conversion are based on phenomenal nibabel tools. Data storage is provided by Orthanc with associated interface.

Usage

Anonymization must be run as a tomcat8 user for access to data files. Check setup in the anonymization.py and run it with runPython.sh anonymization.py.