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NIX User d4e0acb3ef Allow populateImaging to detect not only missing images, but multiple matches as well. Signaled by empty CT/PET_orthancId and lines in missingImages 3 anni fa
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README 53fb46eaa9 Updating to recent version 5 anni fa
addSegmentations.py 3dec2cb5da Update add segmentations 4 anni fa
anonymizeImages.py ae65c9190e Updates 4 anni fa
anonymizeImagesNIfTI.py 53fb46eaa9 Updating to recent version 5 anni fa
anonymizeSegmentations.py 05fa966798 Recent updates 4 anni fa
copyAnonymizedDataset.py 1f7661b703 Adding database management routines 4 anni fa
copyAnonymizedImagesToOrthanc.py 1f7661b703 Adding database management routines 4 anni fa
copyToOrthanc.py 1fd9314ca6 Initial import 5 anni fa
fillClinicalDataInternational.ipynb 90b4734ea6 Adding iypnb jupyter scripts for database manipulation 3 anni fa
findCandidatesForSchedule.py d027e88d51 Adding findCandidatesForSchedule.py 3 anni fa
generateFigures.py 957b0c2fff Updates to automatic routines 3 anni fa
getImages.py 1fd9314ca6 Initial import 5 anni fa
iraemmUploadTestPatients.ipynb 90b4734ea6 Adding iypnb jupyter scripts for database manipulation 3 anni fa
makeAnonymizeLinks.py 1fd9314ca6 Initial import 5 anni fa
makeAnonymizedDataset.py 1f7661b703 Adding database management routines 4 anni fa
modifyDataset.py e452adcbb8 Adding recent scripts, particularly generateFigures.py and updates to segmentationIRAEMM_ONKO.json 3 anni fa
modifyPatients.py 1f7661b703 Adding database management routines 4 anni fa
organ_percentile.py 957b0c2fff Updates to automatic routines 3 anni fa
populateImagingFromOrthanc.py 07478c6846 Making populateImagingFromOrthance.py use Analysis/Run infrastructure 4 anni fa
populateImagingFromTransferList.py d4e0acb3ef Allow populateImaging to detect not only missing images, but multiple matches as well. Signaled by empty CT/PET_orthancId and lines in missingImages 3 anni fa
preprocess.py 0cb3f65861 Adding comments and redirecting gzip to setup.json indicated binary in preprocess.py 3 anni fa
runPython.sh 1cb816f9f9 Merge to core 3 anni fa
runPythonnnUNet.sh f1c4e7b732 Adding un-buffer flag to python for uptodate output 3 anni fa
runSegmentationDM.py 9ae439d111 Adding segmentation configuration files 3 anni fa
runSegmentationnnUNet.py d18ee3ff86 Correcting spelling error 3 anni fa
test.py 43c785d716 Adding test.py script 3 anni fa

README

Run with ./runPython.sh script.py