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irAEMM
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Koks: f045cc682d
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irAEMM
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pythonScripts
NIX User f045cc682d Correcting a dangling if clause in populateImagingFromTransferList.py 2 gadi atpakaļ
..
README 53fb46eaa9 Updating to recent version 4 gadi atpakaļ
addSegmentations.py 3dec2cb5da Update add segmentations 4 gadi atpakaļ
anonymizeImages.py ae65c9190e Updates 4 gadi atpakaļ
anonymizeImagesNIfTI.py 53fb46eaa9 Updating to recent version 4 gadi atpakaļ
anonymizeSegmentations.py 05fa966798 Recent updates 3 gadi atpakaļ
copyAnonymizedDataset.py 1f7661b703 Adding database management routines 4 gadi atpakaļ
copyAnonymizedImagesToOrthanc.py 1f7661b703 Adding database management routines 4 gadi atpakaļ
copyToOrthanc.py 1fd9314ca6 Initial import 4 gadi atpakaļ
fillClinicalDataInternational.ipynb 90b4734ea6 Adding iypnb jupyter scripts for database manipulation 3 gadi atpakaļ
findCandidatesForSchedule.py d027e88d51 Adding findCandidatesForSchedule.py 3 gadi atpakaļ
generateFigures.py 04a1454e76 Robustifying for missing images, mismatches, etc. 3 gadi atpakaļ
getImages.py 1fd9314ca6 Initial import 4 gadi atpakaļ
iraemmUploadTestPatients.ipynb 90b4734ea6 Adding iypnb jupyter scripts for database manipulation 3 gadi atpakaļ
makeAnonymizeLinks.py 1fd9314ca6 Initial import 4 gadi atpakaļ
makeAnonymizedDataset.py 1f7661b703 Adding database management routines 4 gadi atpakaļ
modifyDataset.py e452adcbb8 Adding recent scripts, particularly generateFigures.py and updates to segmentationIRAEMM_ONKO.json 3 gadi atpakaļ
modifyPatients.py 1f7661b703 Adding database management routines 4 gadi atpakaļ
organ_percentile.py 04a1454e76 Robustifying for missing images, mismatches, etc. 3 gadi atpakaļ
populateImagingFromOrthanc.py 07478c6846 Making populateImagingFromOrthance.py use Analysis/Run infrastructure 4 gadi atpakaļ
populateImagingFromTransferList.py f045cc682d Correcting a dangling if clause in populateImagingFromTransferList.py 2 gadi atpakaļ
preprocess.py 04a1454e76 Robustifying for missing images, mismatches, etc. 3 gadi atpakaļ
runPython.sh 1cb816f9f9 Merge to core 3 gadi atpakaļ
runPythonnnUNet.sh f1c4e7b732 Adding un-buffer flag to python for uptodate output 3 gadi atpakaļ
runSegmentationDM.py 9ae439d111 Adding segmentation configuration files 3 gadi atpakaļ
runSegmentationnnUNet.py 04a1454e76 Robustifying for missing images, mismatches, etc. 3 gadi atpakaļ
test.py 43c785d716 Adding test.py script 3 gadi atpakaļ

README

Run with ./runPython.sh script.py