orthancInterface/scripts/uploadFiles.sh

#copy content of directory to orthanc
#works for orthanc 1.12.0, not for 1.6.1


if [ $# -lt 1 ] ; then
	echo $#;
	echo Usage $0 DIR networkConfig;
	exit 0;
fi;

CFG=$2;
USER=$(jq -r ".orthanc.user" $CFG);
PASSWORD=$(jq -r ".orthanc.password" $CFG);
SERVER=$(jq -r ".orthanc.server" $CFG);

CURL="curl -u $USER:$PASSWORD"

arr=($(echo $1/*.zip));

Nall=${#arr[@]};
N=$Nall

echo Loading $N/$Nall;
i=0
for ((j=0;j<Nall;j++)) ; do
	#ls ${arr[j]};
	R=$($CURL -X POST $SERVER/instances --data-binary "@${arr[j]}" |jq -r ".[] | .Status");

		
	for x in $R ; do
		#echo $x;
		if [ $x == "AlreadyStored" ] ; then
			#echo Done
			break;
		else
			#echo New
			i=$((i+1));
			break;
		fi;
	done;

	if [ $i -eq $N ] ; then
		#echo "[$i/$N] Done"
		break;
	else
		#echo "[$i/$N] Not done"
		:
	fi;
	echo "Done [$j/$Nall, new $i]"

done;