 Andrej Studen@Labkey-KNM
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71be3a9b0f
Preventing fitCenters to generate plots of fits
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1 год назад |
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Andrej Studen@Labkey-KNM
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74028781c2
Changing extractCenters to layout with first column for region index; multiple entries can be made for a single region
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1 год назад |
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Andrej Studen@Labkey-KNM
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85cf688137
Adding matlab scripts to handle nrrd segmentations
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1 год назад |
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Andrej Studen@Labkey-KNM
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338139ad91
Finishing matlab scripts with quit statement to prevent hangs on matlab completion
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1 год назад |
 Andrej
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9fb3643710
Adapting pixel analysis to nrrd segmentation files
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1 год назад |
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Andrej
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c50c321b24
Adding helper script for sorting data
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1 год назад |
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Andrej
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146d1bf0f8
Modifying analyzePixelIVF.m to run with Slicer generated segmentations
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1 год назад |
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Andrej Studen@Labkey-KNM
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e556aa5b32
Adding update status function to report progress
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1 год назад |
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Andrej
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a1a06988c7
Segmentation, first try
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1 год назад |
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Andrej
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1dbfdd22ef
Adding imageBrowser
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1 год назад |
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Andrej
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ca707226aa
Adding imageBrowser and licensing under Mozilla license
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1 год назад |
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Andrej Studen@Labkey-KNM
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8227bd308d
Adding virtualenv related requirements.txt
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1 год назад |
 NIX Worker
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adac3b94ea
Delegating and implementing filter parsing in config.py
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1 год назад |
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NIX Worker
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905b4e8c9c
Delegating filter parsing to config
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1 год назад |
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NIX Worker
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6f536a609c
operable doSummary.py
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1 год назад |
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NIX Worker
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cf5e2971b4
Adding doSummary.py
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1 год назад |
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Andrej
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87d8bfd583
validating summaryIVF
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1 год назад |
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NIX Worker
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5e8f30d99f
Functionality to perfrom doPixelAnalysis.py
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1 год назад |
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Andrej
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15edb29494
Update to jupyter
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1 год назад |
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Andrej
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513370ed9e
Updates to getData and segmentation
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1 год назад |
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NIX Worker
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e396c17716
Preparing to run with pixelAnalysis
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1 год назад |
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Andrej
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dcc9d0f7be
Updates to jupyter
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1 год назад |
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Andrej
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1d6cca45c3
Adding vmax as parameters to plotSegmentation
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1 год назад |
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Andrej
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0a768d2e5c
Adding plotSegmentation do segmentation.py
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1 год назад |
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Andrej
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94c1f26a25
Addint getPatientNIM to getData
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1 год назад |
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Andrej
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345e0bdcec
Minor updates to scripts, config file is also used in vangogh mode
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1 год назад |
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NIX Worker
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29a112f380
Adding calculateCenters.py and doAnalysis.py as drivers to replace equivalent shell scripts, so python can start matlab
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1 год назад |
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NIX Worker
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26556c4d35
Making test.py verbose
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1 год назад |
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NIX Worker
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881d83b4c7
Making convertToNRRD.py robust to starting it from anywhere in path, using __file__ variable to determine where to find pythonScripts
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1 год назад |
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NIX Worker
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8d56a9f074
Rearranging scripts to do IO and parse config
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1 год назад |
