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irAEMM
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nixWorker 5d271b8076 Changing ofb to ofb.net for store and set routines hai 3 meses
..
README.md 0ea84c60d5 Changing README to md format, allowing pre-configured path for model in testConfig %!s(int64=2) %!d(string=hai) anos
addSegmentations.py 3dec2cb5da Update add segmentations %!s(int64=5) %!d(string=hai) anos
anonymizeImages.py ae65c9190e Updates %!s(int64=5) %!d(string=hai) anos
anonymizeImagesNIfTI.py 53fb46eaa9 Updating to recent version %!s(int64=6) %!d(string=hai) anos
anonymizeSegmentations.py 05fa966798 Recent updates %!s(int64=5) %!d(string=hai) anos
copyAnonymizedDataset.py 5c691d080a Adding copyAnonymizedDataset.py %!s(int64=3) %!d(string=hai) anos
copyAnonymizedImagesToOrthanc.py 1f7661b703 Adding database management routines %!s(int64=5) %!d(string=hai) anos
copyToOrthanc.py 1fd9314ca6 Initial import %!s(int64=6) %!d(string=hai) anos
fillClinicalDataInternational.ipynb 90b4734ea6 Adding iypnb jupyter scripts for database manipulation %!s(int64=4) %!d(string=hai) anos
findCandidatesForSchedule.py d027e88d51 Adding findCandidatesForSchedule.py %!s(int64=4) %!d(string=hai) anos
generateFigures.py 04a1454e76 Robustifying for missing images, mismatches, etc. %!s(int64=4) %!d(string=hai) anos
generateNPZ.ipynb 7dad40c53c Removing minor errors in NPZ routines %!s(int64=2) %!d(string=hai) anos
generateNPZ.py 7dad40c53c Removing minor errors in NPZ routines %!s(int64=2) %!d(string=hai) anos
getImages.py 1fd9314ca6 Initial import %!s(int64=6) %!d(string=hai) anos
iraemmUploadTestPatients.ipynb 90b4734ea6 Adding iypnb jupyter scripts for database manipulation %!s(int64=4) %!d(string=hai) anos
makeAnonymizeLinks.py 1fd9314ca6 Initial import %!s(int64=6) %!d(string=hai) anos
makeAnonymizedDataset.py 1f7661b703 Adding database management routines %!s(int64=5) %!d(string=hai) anos
modifyDataset.py e452adcbb8 Adding recent scripts, particularly generateFigures.py and updates to segmentationIRAEMM_ONKO.json %!s(int64=4) %!d(string=hai) anos
modifyPatients.py 1f7661b703 Adding database management routines %!s(int64=5) %!d(string=hai) anos
organ_percentile.py a0db02555b Speeding up organ_percentile by looking up a set of participants only hai 3 meses
parseNPZ.py 7dad40c53c Removing minor errors in NPZ routines %!s(int64=2) %!d(string=hai) anos
populateImagingFromOrthanc.py 07478c6846 Making populateImagingFromOrthance.py use Analysis/Run infrastructure %!s(int64=5) %!d(string=hai) anos
populateImagingFromTransferList.py 5061002916 Adding parseDate to account for change of date format from newer versions of labkey hai 11 meses
preprocess.py 5d271b8076 Changing ofb to ofb.net for store and set routines hai 3 meses
runPython.sh 1cb816f9f9 Merge to core %!s(int64=4) %!d(string=hai) anos
runPythonnnUNet.sh f1c4e7b732 Adding un-buffer flag to python for uptodate output %!s(int64=4) %!d(string=hai) anos
runSegmentationDM.py 6ddf9fcc67 Adding entry filter to allow for selection in processing, also, debug parameter in template stops processing after the first entry %!s(int64=2) %!d(string=hai) anos
runSegmentationnnUNet.py 04a1454e76 Robustifying for missing images, mismatches, etc. %!s(int64=4) %!d(string=hai) anos
test.py 793bc4375e Updated test script hai 3 meses

README.md

Run with ./runPython.sh script.py