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irAEMM
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Andrej Studen @ VBOX 7dad40c53c Removing minor errors in NPZ routines hai 1 ano
..
README.md 0ea84c60d5 Changing README to md format, allowing pre-configured path for model in testConfig %!s(int64=2) %!d(string=hai) anos
addSegmentations.py 3dec2cb5da Update add segmentations %!s(int64=4) %!d(string=hai) anos
anonymizeImages.py ae65c9190e Updates %!s(int64=5) %!d(string=hai) anos
anonymizeImagesNIfTI.py 53fb46eaa9 Updating to recent version %!s(int64=5) %!d(string=hai) anos
anonymizeSegmentations.py 05fa966798 Recent updates %!s(int64=4) %!d(string=hai) anos
copyAnonymizedDataset.py 5c691d080a Adding copyAnonymizedDataset.py %!s(int64=2) %!d(string=hai) anos
copyAnonymizedImagesToOrthanc.py 1f7661b703 Adding database management routines %!s(int64=5) %!d(string=hai) anos
copyToOrthanc.py 1fd9314ca6 Initial import %!s(int64=5) %!d(string=hai) anos
fillClinicalDataInternational.ipynb 90b4734ea6 Adding iypnb jupyter scripts for database manipulation %!s(int64=4) %!d(string=hai) anos
findCandidatesForSchedule.py d027e88d51 Adding findCandidatesForSchedule.py %!s(int64=4) %!d(string=hai) anos
generateFigures.py 04a1454e76 Robustifying for missing images, mismatches, etc. %!s(int64=3) %!d(string=hai) anos
generateNPZ.ipynb 7dad40c53c Removing minor errors in NPZ routines hai 1 ano
generateNPZ.py 7dad40c53c Removing minor errors in NPZ routines hai 1 ano
getImages.py 1fd9314ca6 Initial import %!s(int64=5) %!d(string=hai) anos
iraemmUploadTestPatients.ipynb 90b4734ea6 Adding iypnb jupyter scripts for database manipulation %!s(int64=4) %!d(string=hai) anos
makeAnonymizeLinks.py 1fd9314ca6 Initial import %!s(int64=5) %!d(string=hai) anos
makeAnonymizedDataset.py 1f7661b703 Adding database management routines %!s(int64=5) %!d(string=hai) anos
modifyDataset.py e452adcbb8 Adding recent scripts, particularly generateFigures.py and updates to segmentationIRAEMM_ONKO.json %!s(int64=4) %!d(string=hai) anos
modifyPatients.py 1f7661b703 Adding database management routines %!s(int64=5) %!d(string=hai) anos
organ_percentile.py f50a92ad9c Expanding analysis to additional segmentations in organ_percentile %!s(int64=2) %!d(string=hai) anos
parseNPZ.py 7dad40c53c Removing minor errors in NPZ routines hai 1 ano
populateImagingFromOrthanc.py 07478c6846 Making populateImagingFromOrthance.py use Analysis/Run infrastructure %!s(int64=4) %!d(string=hai) anos
populateImagingFromTransferList.py f045cc682d Correcting a dangling if clause in populateImagingFromTransferList.py %!s(int64=3) %!d(string=hai) anos
preprocess.py 04a1454e76 Robustifying for missing images, mismatches, etc. %!s(int64=3) %!d(string=hai) anos
runPython.sh 1cb816f9f9 Merge to core %!s(int64=4) %!d(string=hai) anos
runPythonnnUNet.sh f1c4e7b732 Adding un-buffer flag to python for uptodate output %!s(int64=4) %!d(string=hai) anos
runSegmentationDM.py 6ddf9fcc67 Adding entry filter to allow for selection in processing, also, debug parameter in template stops processing after the first entry %!s(int64=2) %!d(string=hai) anos
runSegmentationnnUNet.py 04a1454e76 Robustifying for missing images, mismatches, etc. %!s(int64=3) %!d(string=hai) anos
test.py 43c785d716 Adding test.py script %!s(int64=4) %!d(string=hai) anos

README.md

Run with ./runPython.sh script.py