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README.md
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0ea84c60d5
Changing README to md format, allowing pre-configured path for model in testConfig
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2 years ago |
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addSegmentations.py
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3dec2cb5da
Update add segmentations
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5 years ago |
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anonymizeImages.py
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ae65c9190e
Updates
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5 years ago |
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anonymizeImagesNIfTI.py
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53fb46eaa9
Updating to recent version
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6 years ago |
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anonymizeSegmentations.py
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05fa966798
Recent updates
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5 years ago |
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copyAnonymizedDataset.py
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5c691d080a
Adding copyAnonymizedDataset.py
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3 years ago |
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copyAnonymizedImagesToOrthanc.py
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1f7661b703
Adding database management routines
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5 years ago |
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copyToOrthanc.py
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1fd9314ca6
Initial import
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6 years ago |
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fillClinicalDataInternational.ipynb
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90b4734ea6
Adding iypnb jupyter scripts for database manipulation
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4 years ago |
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findCandidatesForSchedule.py
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d027e88d51
Adding findCandidatesForSchedule.py
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4 years ago |
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generateFigures.py
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04a1454e76
Robustifying for missing images, mismatches, etc.
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4 years ago |
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generateNPZ.ipynb
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7dad40c53c
Removing minor errors in NPZ routines
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2 years ago |
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generateNPZ.py
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7dad40c53c
Removing minor errors in NPZ routines
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2 years ago |
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getImages.py
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1fd9314ca6
Initial import
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6 years ago |
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iraemmUploadTestPatients.ipynb
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90b4734ea6
Adding iypnb jupyter scripts for database manipulation
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4 years ago |
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makeAnonymizeLinks.py
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1fd9314ca6
Initial import
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6 years ago |
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makeAnonymizedDataset.py
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1f7661b703
Adding database management routines
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5 years ago |
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modifyDataset.py
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e452adcbb8
Adding recent scripts, particularly generateFigures.py and updates to segmentationIRAEMM_ONKO.json
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4 years ago |
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modifyPatients.py
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1f7661b703
Adding database management routines
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5 years ago |
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organ_percentile.py
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a0db02555b
Speeding up organ_percentile by looking up a set of participants only
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3 months ago |
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parseNPZ.py
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7dad40c53c
Removing minor errors in NPZ routines
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2 years ago |
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populateImagingFromOrthanc.py
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07478c6846
Making populateImagingFromOrthance.py use Analysis/Run infrastructure
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5 years ago |
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populateImagingFromTransferList.py
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5061002916
Adding parseDate to account for change of date format from newer versions of labkey
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10 months ago |
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preprocess.py
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5d271b8076
Changing ofb to ofb.net for store and set routines
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2 months ago |
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runPython.sh
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1cb816f9f9
Merge to core
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4 years ago |
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runPythonnnUNet.sh
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f1c4e7b732
Adding un-buffer flag to python for uptodate output
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4 years ago |
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runSegmentationDM.py
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6ddf9fcc67
Adding entry filter to allow for selection in processing, also, debug parameter in template stops processing after the first entry
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2 years ago |
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runSegmentationnnUNet.py
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04a1454e76
Robustifying for missing images, mismatches, etc.
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4 years ago |
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test.py
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793bc4375e
Updated test script
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3 months ago |
nixWorker