 Andrej Studen
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3bd671d169
Switching to pypi nixWrapper
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2 weeks ago |
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Andrej Studen
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77d1d4e022
Switching to pypi nixWrapper
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2 weeks ago |
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Andrej Studen
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64d836ed75
Modify segment colors
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1 month ago |
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Andrej Studen
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a3c6ec9200
Adding spacer between clear and save buttons, adding a confirmation dialog on clear, adding a timer on save button to change it to gray after 5 seconds
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1 month ago |
 nixWorker
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c0ca112116
Clearing syntay errors in statUtils.py
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1 month ago |
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nixWorker
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246d0b8a3a
Protect agains missing images in Imaging dataset in statUtils.py
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1 month ago |
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nixWorker
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15bde3a8c0
Rounding nvoxels to nearest integer, adding ERROR to lines reporting difficulties with upload, and reporting segmentation dataset when in getSegmentations for statUtils.py
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1 month ago |
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nixWorker
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87efe7325a
Adding petField and segmentationDataset fields to setup statistics.json
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1 month ago |
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nixWorker
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29dff5049a
Allowing for getSegmentations to look in setup set segmentationDataset
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1 month ago |
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nixWorker
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c28edd7418
Adding multiple threshold strategies plus adjustments for segmentation dataset other than Segmentations and pet field other than petResampled
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1 month ago |
 Andrej
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76e30449c7
Removing debug in imageBrowser.py
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1 month ago |
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Andrej
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09da6fe82c
Updating conversion format in imageBrowser.py
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1 month ago |
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Andrej
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4c8ff9e8dd
Debugging parsing dates in imageBrowser.py
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1 month ago |
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Andrej
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9cd5813bbb
Updating parsing dates from labkey in imageBrowser
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1 month ago |
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Andrej Studen
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2c6ad66e38
Adding update prospective setup file
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3 months ago |
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Andrej Studen
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b7952debe1
minor error in imageBrowser
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3 months ago |
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Andrej Studen
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7ab857e756
adding possibility to overrride petField and ctField in configuration file
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3 months ago |
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Andrej Studen
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c7da6138e9
Update to prospective configuration
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4 months ago |
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Andrej Studen
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92ed17c6be
adding ORLPET_iBrowser.json configuration file as a valid option
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9 months ago |
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nixWorker
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e5a5e21db9
runStat cleanup, adding forceGlobal, forceLiver15, forceLiver and forceSUVMax flags, doUpload flag, and changing liver15 threshold formula
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10 months ago |
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Andrej Studen
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f9f17be78d
Correcting for missing liver segmentation in threshold calculation when liver and disease are in different PET files
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10 months ago |
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Andrej Studen
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495c4bbe80
Updates to anonymization routine
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10 months ago |
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Andrej Studen
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7a794a39d6
Updating to match JSON parsed response from modifyRows
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11 months ago |
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Andrej Studen
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a56baa528e
Adding Liver1p5
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11 months ago |
 NIX User
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a055c84b39
Adding anonymization routine
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1 year ago |
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Andrej Studen
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bbf638cff4
Removing encoding from imageBrowser, now all JSON conversion is done by labkeyInterface
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1 year ago |
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Andrej Studen
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c43a3c1484
Adding overlay to preprocess.py
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1 year ago |
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Andrej Studen
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4ac0852fb0
Having preprocess.py sensitive to needsResampling flag in Imaging1 dataset
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1 year ago |
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Andrej Studen
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039a6834cf
Adding metastases as a default segment
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1 year ago |
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Andrej Studen
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33b3142924
Adding SD as parameters for image quantification
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1 year ago |
