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Andrej Studen ab22d0e9bf Splitting runPython.sh to runPythonnnUNet.sh to use with nnUNet code 3 lat temu
..
README 53fb46eaa9 Updating to recent version 4 lat temu
addSegmentations.py 3dec2cb5da Update add segmentations 4 lat temu
anonymizeImages.py ae65c9190e Updates 4 lat temu
anonymizeImagesNIfTI.py 53fb46eaa9 Updating to recent version 4 lat temu
anonymizeSegmentations.py 05fa966798 Recent updates 3 lat temu
copyAnonymizedDataset.py 1f7661b703 Adding database management routines 4 lat temu
copyAnonymizedImagesToOrthanc.py 1f7661b703 Adding database management routines 4 lat temu
copyToOrthanc.py 1fd9314ca6 Initial import 4 lat temu
fillClinicalDataInternational.ipynb 90b4734ea6 Adding iypnb jupyter scripts for database manipulation 3 lat temu
getImages.py 1fd9314ca6 Initial import 4 lat temu
iraemmUploadTestPatients.ipynb 90b4734ea6 Adding iypnb jupyter scripts for database manipulation 3 lat temu
makeAnonymizeLinks.py 1fd9314ca6 Initial import 4 lat temu
makeAnonymizedDataset.py 1f7661b703 Adding database management routines 4 lat temu
modifyPatients.py 1f7661b703 Adding database management routines 4 lat temu
populateImagingFromOrthanc.py 07478c6846 Making populateImagingFromOrthance.py use Analysis/Run infrastructure 4 lat temu
populateImagingFromTransferList.py 05fa966798 Recent updates 3 lat temu
preprocess.py d23fdfb3fd Updating preprocess.py 4 lat temu
runPython.sh ab22d0e9bf Splitting runPython.sh to runPythonnnUNet.sh to use with nnUNet code 3 lat temu
runPythonnnUNet.sh ab22d0e9bf Splitting runPython.sh to runPythonnnUNet.sh to use with nnUNet code 3 lat temu
runSegmentationDM.py 9ae439d111 Adding segmentation configuration files 3 lat temu
runSegmentationnnUNet.py 9ae439d111 Adding segmentation configuration files 3 lat temu
test.py 43c785d716 Adding test.py script 3 lat temu

README

Run with ./runPython.sh script.py