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irAEMM
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pythonScripts
Andrej Studen e452adcbb8 Adding recent scripts, particularly generateFigures.py and updates to segmentationIRAEMM_ONKO.json 3 years ago
..
README 53fb46eaa9 Updating to recent version 4 years ago
addSegmentations.py 3dec2cb5da Update add segmentations 4 years ago
anonymizeImages.py ae65c9190e Updates 4 years ago
anonymizeImagesNIfTI.py 53fb46eaa9 Updating to recent version 4 years ago
anonymizeSegmentations.py 05fa966798 Recent updates 3 years ago
copyAnonymizedDataset.py 1f7661b703 Adding database management routines 4 years ago
copyAnonymizedImagesToOrthanc.py 1f7661b703 Adding database management routines 4 years ago
copyToOrthanc.py 1fd9314ca6 Initial import 4 years ago
fillClinicalDataInternational.ipynb 90b4734ea6 Adding iypnb jupyter scripts for database manipulation 3 years ago
findCandidatesForSchedule.py d027e88d51 Adding findCandidatesForSchedule.py 3 years ago
generateFigures.py e452adcbb8 Adding recent scripts, particularly generateFigures.py and updates to segmentationIRAEMM_ONKO.json 3 years ago
getImages.py 1fd9314ca6 Initial import 4 years ago
iraemmUploadTestPatients.ipynb 90b4734ea6 Adding iypnb jupyter scripts for database manipulation 3 years ago
makeAnonymizeLinks.py 1fd9314ca6 Initial import 4 years ago
makeAnonymizedDataset.py 1f7661b703 Adding database management routines 4 years ago
modifyDataset.py e452adcbb8 Adding recent scripts, particularly generateFigures.py and updates to segmentationIRAEMM_ONKO.json 3 years ago
modifyPatients.py 1f7661b703 Adding database management routines 4 years ago
organ_percentile.py c7f8174426 Adding organ_percentile calculation, runs with segmentation.json 3 years ago
populateImagingFromOrthanc.py 07478c6846 Making populateImagingFromOrthance.py use Analysis/Run infrastructure 4 years ago
populateImagingFromTransferList.py 7df6a921f2 Updating populateImageFromTransferList to update failureStatus 3 years ago
preprocess.py 0cb3f65861 Adding comments and redirecting gzip to setup.json indicated binary in preprocess.py 3 years ago
runPython.sh 1cb816f9f9 Merge to core 3 years ago
runPythonnnUNet.sh f1c4e7b732 Adding un-buffer flag to python for uptodate output 3 years ago
runSegmentationDM.py 9ae439d111 Adding segmentation configuration files 3 years ago
runSegmentationnnUNet.py d18ee3ff86 Correcting spelling error 3 years ago
test.py 43c785d716 Adding test.py script 3 years ago

README

Run with ./runPython.sh script.py