 Andrej Studen@Labkey-KNM
|
8227bd308d
Adding virtualenv related requirements.txt
|
vor 1 Jahr |
 NIX Worker
|
adac3b94ea
Delegating and implementing filter parsing in config.py
|
vor 1 Jahr |
|
NIX Worker
|
905b4e8c9c
Delegating filter parsing to config
|
vor 1 Jahr |
|
NIX Worker
|
6f536a609c
operable doSummary.py
|
vor 1 Jahr |
|
NIX Worker
|
cf5e2971b4
Adding doSummary.py
|
vor 1 Jahr |
 Andrej
|
87d8bfd583
validating summaryIVF
|
vor 1 Jahr |
|
NIX Worker
|
5e8f30d99f
Functionality to perfrom doPixelAnalysis.py
|
vor 1 Jahr |
|
Andrej
|
15edb29494
Update to jupyter
|
vor 1 Jahr |
|
Andrej
|
513370ed9e
Updates to getData and segmentation
|
vor 1 Jahr |
|
NIX Worker
|
e396c17716
Preparing to run with pixelAnalysis
|
vor 1 Jahr |
|
Andrej
|
dcc9d0f7be
Updates to jupyter
|
vor 1 Jahr |
|
Andrej
|
1d6cca45c3
Adding vmax as parameters to plotSegmentation
|
vor 1 Jahr |
|
Andrej
|
0a768d2e5c
Adding plotSegmentation do segmentation.py
|
vor 1 Jahr |
|
Andrej
|
94c1f26a25
Addint getPatientNIM to getData
|
vor 1 Jahr |
|
Andrej
|
345e0bdcec
Minor updates to scripts, config file is also used in vangogh mode
|
vor 1 Jahr |
|
NIX Worker
|
29a112f380
Adding calculateCenters.py and doAnalysis.py as drivers to replace equivalent shell scripts, so python can start matlab
|
vor 1 Jahr |
|
NIX Worker
|
26556c4d35
Making test.py verbose
|
vor 1 Jahr |
|
NIX Worker
|
881d83b4c7
Making convertToNRRD.py robust to starting it from anywhere in path, using __file__ variable to determine where to find pythonScripts
|
vor 1 Jahr |
|
NIX Worker
|
8d56a9f074
Rearranging scripts to do IO and parse config
|
vor 1 Jahr |
|
NIX Worker
|
e3c0099dab
Making analysis run matlab scripts directly
|
vor 1 Jahr |
|
NIX Worker
|
05aa81223b
Updating matlab scripts to rely on path supplied as argument and be robust to 2017a version where read/write matrix is replaced with dlmread/write
|
vor 1 Jahr |
|
Andrej
|
bbe9982a4c
Adding test.py slicer script
|
vor 1 Jahr |
|
Andrej
|
034e09bc30
Modified notebooks
|
vor 2 Jahren |
|
Andrej
|
2a634e8c4c
Adding analysis classes to a module
|
vor 2 Jahren |
|
Andrej
|
8f169c6170
Moving segmentation functions from notebook to package
|
vor 2 Jahren |
|
Andrej
|
8ee45b28e9
Changed number of global fit minimum search to 40 for fitCentersPixelIVF.mg
|
vor 2 Jahren |
|
Andrej
|
c317e06d8d
Version that produced results sent in email to Luka, Oct 28th 2022.
|
vor 2 Jahren |
|
Andrej
|
fde4aa8d47
Up to generate centers, including matlab files
|
vor 2 Jahren |
|
Andrej
|
addd6a19a1
Removing files from other projects
|
vor 2 Jahren |
|
Andrej
|
c6d5d1c806
Removing files from other projects
|
vor 2 Jahren |
