 Andrej Studen@Labkey-KNM
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8227bd308d
Adding virtualenv related requirements.txt
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1 gadu atpakaļ |
 NIX Worker
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adac3b94ea
Delegating and implementing filter parsing in config.py
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1 gadu atpakaļ |
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NIX Worker
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905b4e8c9c
Delegating filter parsing to config
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1 gadu atpakaļ |
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NIX Worker
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6f536a609c
operable doSummary.py
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1 gadu atpakaļ |
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NIX Worker
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cf5e2971b4
Adding doSummary.py
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1 gadu atpakaļ |
 Andrej
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87d8bfd583
validating summaryIVF
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1 gadu atpakaļ |
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NIX Worker
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5e8f30d99f
Functionality to perfrom doPixelAnalysis.py
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1 gadu atpakaļ |
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Andrej
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15edb29494
Update to jupyter
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1 gadu atpakaļ |
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Andrej
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513370ed9e
Updates to getData and segmentation
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1 gadu atpakaļ |
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NIX Worker
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e396c17716
Preparing to run with pixelAnalysis
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1 gadu atpakaļ |
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Andrej
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dcc9d0f7be
Updates to jupyter
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1 gadu atpakaļ |
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Andrej
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1d6cca45c3
Adding vmax as parameters to plotSegmentation
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1 gadu atpakaļ |
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Andrej
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0a768d2e5c
Adding plotSegmentation do segmentation.py
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1 gadu atpakaļ |
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Andrej
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94c1f26a25
Addint getPatientNIM to getData
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1 gadu atpakaļ |
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Andrej
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345e0bdcec
Minor updates to scripts, config file is also used in vangogh mode
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1 gadu atpakaļ |
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NIX Worker
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29a112f380
Adding calculateCenters.py and doAnalysis.py as drivers to replace equivalent shell scripts, so python can start matlab
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1 gadu atpakaļ |
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NIX Worker
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26556c4d35
Making test.py verbose
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1 gadu atpakaļ |
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NIX Worker
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881d83b4c7
Making convertToNRRD.py robust to starting it from anywhere in path, using __file__ variable to determine where to find pythonScripts
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1 gadu atpakaļ |
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NIX Worker
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8d56a9f074
Rearranging scripts to do IO and parse config
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1 gadu atpakaļ |
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NIX Worker
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e3c0099dab
Making analysis run matlab scripts directly
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1 gadu atpakaļ |
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NIX Worker
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05aa81223b
Updating matlab scripts to rely on path supplied as argument and be robust to 2017a version where read/write matrix is replaced with dlmread/write
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1 gadu atpakaļ |
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Andrej
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bbe9982a4c
Adding test.py slicer script
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1 gadu atpakaļ |
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Andrej
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034e09bc30
Modified notebooks
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2 gadi atpakaļ |
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Andrej
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2a634e8c4c
Adding analysis classes to a module
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2 gadi atpakaļ |
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Andrej
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8f169c6170
Moving segmentation functions from notebook to package
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2 gadi atpakaļ |
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Andrej
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8ee45b28e9
Changed number of global fit minimum search to 40 for fitCentersPixelIVF.mg
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2 gadi atpakaļ |
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Andrej
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c317e06d8d
Version that produced results sent in email to Luka, Oct 28th 2022.
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2 gadi atpakaļ |
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Andrej
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fde4aa8d47
Up to generate centers, including matlab files
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2 gadi atpakaļ |
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Andrej
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addd6a19a1
Removing files from other projects
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2 gadi atpakaļ |
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Andrej
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c6d5d1c806
Removing files from other projects
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2 gadi atpakaļ |
