Andrej bf13fea75b Compact way to generate values for the fits in matlab 1 year ago
..
nrrd_read_write_rensonnet fde4aa8d47 Up to generate centers, including matlab files 2 years ago
HOWTO fde4aa8d47 Up to generate centers, including matlab files 2 years ago
README.md fde4aa8d47 Up to generate centers, including matlab files 2 years ago
analyze.m 338139ad91 Finishing matlab scripts with quit statement to prevent hangs on matlab completion 1 year ago
analyzeIVF.m 338139ad91 Finishing matlab scripts with quit statement to prevent hangs on matlab completion 1 year ago
analyzePixel.m 338139ad91 Finishing matlab scripts with quit statement to prevent hangs on matlab completion 1 year ago
analyzePixelIVF.m 85cf688137 Adding matlab scripts to handle nrrd segmentations 1 year ago
evaluateCenterDiff.m fde4aa8d47 Up to generate centers, including matlab files 2 years ago
evaluateCenters.m fde4aa8d47 Up to generate centers, including matlab files 2 years ago
evaluateSingleDiff.m fde4aa8d47 Up to generate centers, including matlab files 2 years ago
evaluateSingleDiffZero.m fde4aa8d47 Up to generate centers, including matlab files 2 years ago
extractCenters.m 74028781c2 Changing extractCenters to layout with first column for region index; multiple entries can be made for a single region 1 year ago
extractPixelsFromNrrd.m 85cf688137 Adding matlab scripts to handle nrrd segmentations 1 year ago
fitCenters.m e098801656 Cosmetic changes to fitCenters 1 year ago
fitCentersIVF.m 285e42984e Adding ploting of IVF fits in fitCentersIVF 1 year ago
fitCentersPixel.asv fde4aa8d47 Up to generate centers, including matlab files 2 years ago
fitCentersPixel.m 05aa81223b Updating matlab scripts to rely on path supplied as argument and be robust to 2017a version where read/write matrix is replaced with dlmread/write 1 year ago
fitCentersPixelIVF.m 05aa81223b Updating matlab scripts to rely on path supplied as argument and be robust to 2017a version where read/write matrix is replaced with dlmread/write 1 year ago
fitFromClusters.asv fde4aa8d47 Up to generate centers, including matlab files 2 years ago
fitFromClusters.m 05aa81223b Updating matlab scripts to rely on path supplied as argument and be robust to 2017a version where read/write matrix is replaced with dlmread/write 1 year ago
fitSingle.m 032bbc54b8 Correcting fit functions to use delays, in some rare conditions non-offseted time values were still used 1 year ago
fitSingleRamp.m fde4aa8d47 Up to generate centers, including matlab files 2 years ago
fitSingleZero.m 032bbc54b8 Correcting fit functions to use delays, in some rare conditions non-offseted time values were still used 1 year ago
generateCenters.m 18e26aadd9 Adding quit to generateCenters 1 year ago
generateInitialValues.m fde4aa8d47 Up to generate centers, including matlab files 2 years ago
getData.m fde4aa8d47 Up to generate centers, including matlab files 2 years ago
globalValueGenerator.m bf13fea75b Compact way to generate values for the fits in matlab 1 year ago
loadCenters.m 05aa81223b Updating matlab scripts to rely on path supplied as argument and be robust to 2017a version where read/write matrix is replaced with dlmread/write 1 year ago
loadData.m 05aa81223b Updating matlab scripts to rely on path supplied as argument and be robust to 2017a version where read/write matrix is replaced with dlmread/write 1 year ago
loadPixels.m fde4aa8d47 Up to generate centers, including matlab files 2 years ago
loadResults.m fde4aa8d47 Up to generate centers, including matlab files 2 years ago
loadSPECTdata.m c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. 2 years ago
loadSegmentation.m fde4aa8d47 Up to generate centers, including matlab files 2 years ago
loadTime.asv fde4aa8d47 Up to generate centers, including matlab files 2 years ago
loadTime.m 05aa81223b Updating matlab scripts to rely on path supplied as argument and be robust to 2017a version where read/write matrix is replaced with dlmread/write 1 year ago
nrrdWriter.m fde4aa8d47 Up to generate centers, including matlab files 2 years ago
nrrdread.m fde4aa8d47 Up to generate centers, including matlab files 2 years ago
plotFunctions.m fde4aa8d47 Up to generate centers, including matlab files 2 years ago
readFitParameters.m 05aa81223b Updating matlab scripts to rely on path supplied as argument and be robust to 2017a version where read/write matrix is replaced with dlmread/write 1 year ago
rfp.m 05aa81223b Updating matlab scripts to rely on path supplied as argument and be robust to 2017a version where read/write matrix is replaced with dlmread/write 1 year ago
saveCenters.m 05aa81223b Updating matlab scripts to rely on path supplied as argument and be robust to 2017a version where read/write matrix is replaced with dlmread/write 1 year ago
writeData.m fde4aa8d47 Up to generate centers, including matlab files 2 years ago

README.md

Usage

Master routines are written in analyze.m. Full usage:

patientId='XXX'
analyze